Display Sequential Order of Events by Subtype

Usage

pvd_subtype_lineplot(
  figs,
  events_to_highlight,
  min_alpha = 0.25,
  max_alpha = 1,
  stage_alpha = 1,
  facet_names = names(figs),
  facet_label_prefixes = NULL,
  facet_labels = unlist(compact_pvd_facet_labels(figs = figs, facet_label_prefix =
    facet_label_prefixes)),
  text_size = 3.4,
  y_lab = "Sequential order",
  y_title_size = 9,
  y_text_size = 8,
  x_text_size = 8,
  subtype_x = c(1, 3, 5, 7),
  mult = 0.2,
  align_stage = TRUE,
  use_group_colors = FALSE,
  group_cols = group_colors(figs),
  legend_text_size = grid::unit(7, "pt"),
  ...
)

Arguments

figs: A list of todo
events_to_highlight: todo
min_alpha: todo
max_alpha: todo
stage_alpha: todo
facet_names: character: facet names
facet_label_prefixes: character: prefixes for facet labels
facet_labels: todo
text_size: todo
y_lab: todo
y_title_size: todo
y_text_size: todo
x_text_size: todo
subtype_x: Vector of x-axis value for the subtypes.
mult: numeric vector
align_stage: logical whether to align by FXTAS stage
use_group_colors: logical: whether to use existing group colors or custom line colors from events_to_highlight argument
group_cols: a named character vector mapping from biomarker_group to a color palette
legend_text_size: grid::unit: legend text size
...: additional arguments passed to ggbump::geom_bump Default = c(1, 1.15, 1.75, 2.35)