Print prob_correct objects as Pandoc markdown tables
Source: R/compute_prob_correct.R
pander.prob_correct.RdThis function is a method of the pander::pander() function
from the pander package, for prob_correct objects
(from compute_prob_correct()).
It prints prob_correct objects as Pandoc markdown tables.
Arguments
- x
a
prob_correctobject (fromcompute_prob_correct())- ...
currently unused
Value
By default this function outputs (see: cat) the result. If you would want to catch the result instead, then call the function ending in .return.
Examples
full_data <- test_data_v1
v1_usable <- full_data |> dplyr::filter(CGG < 200)
biomarker_groups <- compile_biomarker_groups_table(
dataset = v1_usable)
biomarker_varnames <-
biomarker_groups |>
dplyr::pull("biomarker")
biomarker_levels <-
v1_usable |>
get_levels(biomarker_varnames)
control_data <-
v1_usable |>
dplyr::filter(`FX*` == "CGG <55") |>
dplyr::select(all_of(biomarker_varnames))
control_data |>
compute_prob_correct(
max_prob = .95,
biomarker_levels = biomarker_levels
) |>
attr("data") |>
pander::pander()
#>
#> -----------------------------------------------------------------------
#> Symptom # controls with data # at baseline
#> -------------------------------- ---------------------- ---------------
#> Head tremor 22 21
#>
#> Intention tremor 37 18
#>
#> Resting tremor 45 38
#>
#> Postural tremor 39 27
#>
#> Intermittent tremor 44 33
#>
#> Ataxia 39 17
#>
#> Ataxia: severity* 45 36
#>
#> FXTAS Stage 48 16
#>
#> parkinsonian features 21 18
#>
#> Masked faces 43 40
#>
#> Increased tone 31 27
#>
#> Pill-rolling tremor 30 29
#>
#> Stiff gait 30 26
#>
#> Parkinsons 13 12
#>
#> MCP-WM Hyperintensity 18 10
#>
#> MRI: Cerebellar 22 3
#>
#> MRI: Cerebral 19 0
#>
#> Splenium (CC)-WM 23 5
#> Hyperintensity
#>
#> Genu (CC)-WM Hyperintensity 15 7
#>
#> Corpus Callosum-Thickness 17 7
#>
#> MMSE total score* 17 14
#>
#> BDS-2 Total Score* 48 37
#>
#> SCID: mood disorders 26 16
#>
#> SCID: substance use disorders 18 16
#>
#> SCID: anxiety disorders 30 9
#>
#> SCID: somatoform disorders 24 24
#>
#> SWM Between errors* 33 22
#>
#> PAL Total errors (adjusted)* 26 10
#>
#> RTI Five-choice movement time* 28 19
#>
#> Hypothyroid 35 32
#>
#> Hyperthyroid 36 34
#>
#> any autoimmune disorder 45 37
#> -----------------------------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> ----------------------------------
#> % at baseline Est. Pr(correct)
#> --------------- ------------------
#> 95.5% 95%
#>
#> 48.6% 48.6%
#>
#> 84.4% 84.4%
#>
#> 69.2% 69.2%
#>
#> 75% 75%
#>
#> 43.6% 43.6%
#>
#> 80% 80%
#>
#> 33.3% 33.3%
#>
#> 85.7% 85.7%
#>
#> 93% 93%
#>
#> 87.1% 87.1%
#>
#> 96.7% 95%
#>
#> 86.7% 86.7%
#>
#> 92.3% 92.3%
#>
#> 55.6% 55.6%
#>
#> 13.6% 13.6%
#>
#> 0% 0%
#>
#> 21.7% 21.7%
#>
#> 46.7% 46.7%
#>
#> 41.2% 41.2%
#>
#> 82.4% 82.4%
#>
#> 77.1% 77.1%
#>
#> 61.5% 61.5%
#>
#> 88.9% 88.9%
#>
#> 30% 30%
#>
#> 100% 95%
#>
#> 66.7% 66.7%
#>
#> 38.5% 38.5%
#>
#> 67.9% 67.9%
#>
#> 91.4% 91.4%
#>
#> 94.4% 94.4%
#>
#> 82.2% 82.2%
#> ----------------------------------
#>