Print prob_correct objects as Pandoc markdown tables
Source: R/compute_prob_correct.R
pander.prob_correct.RdThis function is a method of the pander::pander() function
from the pander package, for prob_correct objects
(from compute_prob_correct()).
It prints prob_correct objects as Pandoc markdown tables.
Arguments
- x
a
prob_correctobject (fromcompute_prob_correct())- ...
currently unused
Value
By default this function outputs (see: cat) the result. If you would want to catch the result instead, then call the function ending in .return.
Examples
full_data <- test_data_v1
v1_usable <- full_data |> dplyr::filter(CGG < 200)
biomarker_groups <- compile_biomarker_groups_table(
dataset = v1_usable)
biomarker_varnames <-
biomarker_groups |>
dplyr::pull("biomarker")
biomarker_levels <-
v1_usable |>
get_levels(biomarker_varnames)
control_data <-
v1_usable |>
dplyr::filter(`FX*` == "CGG <55") |>
dplyr::select(all_of(biomarker_varnames))
control_data |>
compute_prob_correct(
max_prob = .95,
biomarker_levels = biomarker_levels
) |>
attr("data") |>
pander::pander()
#>
#> -----------------------------------------------------------------------
#> Symptom # controls with data # at baseline
#> -------------------------------- ---------------------- ---------------
#> head tremor 22 15
#>
#> intention tremor 46 20
#>
#> resting tremor 52 47
#>
#> postural tremor 50 35
#>
#> intermittent tremor 45 30
#>
#> Tandem Walk 25 11
#>
#> ataxia severity* 52 38
#>
#> FXTAS Stage 52 18
#>
#> parkinsonian features 42 33
#>
#> Parkinsons 12 12
#>
#> MCP-WM Hyperintensity 21 12
#>
#> MRI: Cerebellar 18 9
#>
#> MRI: Cerebral 27 5
#>
#> Splenium (CC)-WM 8 1
#> Hyperintensity
#>
#> Genu (CC)-WM Hyperintensity 16 11
#>
#> Corpus Callosum-Thickness 22 12
#>
#> MMSE total score* 23 20
#>
#> BDS-2 Total Score* 50 40
#>
#> SCID: mood disorders 26 13
#>
#> SCID: substance use disorders 35 28
#>
#> SCID: anxiety disorders 28 13
#>
#> SCID: somatoform disorders 19 19
#>
#> SWM Between errors* 31 24
#>
#> PAL Total errors (adjusted)* 27 11
#>
#> RTI Five-choice movement time* 39 27
#>
#> Hypothyroid 44 38
#>
#> Hyperthyroid 38 37
#>
#> any autoimmune disorder 46 40
#> -----------------------------------------------------------------------
#>
#> Table: Table continues below
#>
#>
#> ----------------------------------
#> % at baseline Est. Pr(correct)
#> --------------- ------------------
#> 68.2% 68.2%
#>
#> 43.5% 43.5%
#>
#> 90.4% 90.4%
#>
#> 70% 70%
#>
#> 66.7% 66.7%
#>
#> 44% 44%
#>
#> 73.1% 73.1%
#>
#> 34.6% 34.6%
#>
#> 78.6% 78.6%
#>
#> 100% 95%
#>
#> 57.1% 57.1%
#>
#> 50% 50%
#>
#> 18.5% 18.5%
#>
#> 12.5% 12.5%
#>
#> 68.8% 68.8%
#>
#> 54.5% 54.5%
#>
#> 87% 87%
#>
#> 80% 80%
#>
#> 50% 50%
#>
#> 80% 80%
#>
#> 46.4% 46.4%
#>
#> 100% 95%
#>
#> 77.4% 77.4%
#>
#> 40.7% 40.7%
#>
#> 69.2% 69.2%
#>
#> 86.4% 86.4%
#>
#> 97.4% 95%
#>
#> 87% 87%
#> ----------------------------------
#>